Host Plant Research Articles

An electrophoretic mobility shift assay using the protein isolated from host plants

BackgroundThe electrophoretic mobility shift assay (EMSA) is a common technology to detect DNA-protein interactions. However, in most cases, the protein used in EMSA is obtained via prokaryotic expression, and rarely from plants. At the same time, the proteins expressed from prokaryotic systems usually cannot fold naturally and have no post translationally modification, which may affect the binding of proteins to DNA.ResultsHere, we develop a technique to quickly isolate proteins of interest from host plants and then analyze them using fluorescent EMSA. This technology system is called: protein from plants fluorescent EMSA method (PPF-EMSA). In PPF-EMSA, a special transient transformation method is employed to transiently deliver genes into the plant, enabling efficient synthesis the encoded proteins. Then, the target protein is isolated using immunoprecipitation, and the DNA probes were labeled with cyanine 3 (Cy3). Both fluorescent EMSA and super-shift fluorescent EMSA can be performed using the proteins from plants. Three kinds of plants, Betula platyphylla, Populus. davidiana×P. bolleana and Arabidopsis thaliana, are used in this study. The proteins isolated from plants are in a natural state, can fold naturally and are posttranslationally modified, enabling true binding to their cognate DNAs.ConclusionAs transient transformation can be performed quickly and not depended on whether stable transformation is available or not, we believe this method will have a wide application, enabling isolation of proteins from host plant conveniently.

Indirect effects of plasma-activated water irrigation on Tetranychus urticae populations

AbstractPlasma-activated water (PAW) is receiving increased attention as a booster of seed germination and seedling vigor, and some studies have described use of PAW to manage crop pathogens. Here, we examined physicochemical properties of two PAWs (referred to as PAW 6.0 and 9.4 min with atmospheric plasma jet) and assessed “their indirect effects” (applied as supplementary irrigation) on host suitability of tomato plants (Solanum lycopersicum L.) to two-spotted spider mites (Tetranychus urticae Koch). Exposure of water to cold plasma significantly lowered pH and increased concentrations of H2O2, NO2−, and NO3−. Supplementary PAW irrigations elicited significant increases in leaf composition of several elements (N, P, K S, Ca, and Mg), leaf reflectance, plant size, and trichome densities (except non-glandular trichomes on the adaxial surface). Preference bioassays revealed significant avoidance of settling and reduced oviposition by two-spotted spider mites on leaf discs from PAW-irrigated plants compared to those from untreated control plants. Performance bioassays showed a significant decrease in two-spotted spider mite populations on PAW-irrigated plants. Results presented in this study provide comprehensive support to the hypothesis that indirect effects of supplementary PAW irrigation significantly reduce host plant suitability to two-spotted spider mites. PAW 6.0 may be slightly better than PAW 9.4, and this difference in performance is discussed in this study. Applications of PAW as supplementary irrigation are likely highly compatible with other IPM tactics and should be considered an innovative and sustainable component in twenty-first-century pest management.

Divergent Aspergillus flavus corn population is composed of prolific conidium producers: Implications for saprophytic disease cycle

ABSTRACT The ascomycete fungus Aspergillus flavus infects and contaminates corn, peanuts, cottonseed, and tree nuts with toxic and carcinogenic aflatoxins. Subdivision between soil and host plant populations suggests that certain A. flavus strains are specialized to infect peanut, cotton, and corn despite having a broad host range. In this study, the ability of strains isolated from corn and/or soil in 11 Louisiana fields to produce conidia (field inoculum and male gamete) and sclerotia (resting bodies and female gamete) was assessed and compared with genotypic single-nucleotide polymorphism (SNP) differences between whole genomes. Corn strains produced upward of 47× more conidia than strains restricted to soil. Conversely, corn strains produced as much as 3000× fewer sclerotia than soil strains. Aspergillus flavus strains, typified by sclerotium diameter (small S-strains, <400 μm; large L-strains, >400 μm), belonged to separate clades. Several strains produced a mixture (M) of S and L sclerotia, and an intermediate number of conidia and sclerotia, compared with typical S-strains (minimal conidia, copious sclerotia) and L-strains (copious conidia, minimal sclerotia). They also belonged to a unique phylogenetic mixed (M) clade. Migration from soil to corn positively correlated with conidium production and negatively correlated with sclerotium production. Genetic differences correlated with differences in conidium and sclerotium production. Opposite skews in female (sclerotia) or male (conidia) gametic production by soil or corn strains, respectively, resulted in reduced effective breeding population sizes when comparing male:female gamete ratio with mating type distribution. Combining both soil and corn populations increased the effective breeding population, presumably due to contribution of male gametes from corn, which fertilize sclerotia on the soil surface. Incongruencies between aflatoxin clusters, strain morphotype designation, and whole genome phylogenies suggest a history of sexual reproduction within this Louisiana population, demonstrating the importance of conidium production, as infectious propagules and as fertilizers of the A. flavus soil population.

Identification of the coexisting virus-derived siRNA in maize and rice infected by rice black-streaked dwarf virus.

Rice black-streaked dwarf virus is transmitted by small brown planthoppers, which causes maize rough dwarf disease and rice black-streaked dwarf disease. This virus leads to slow growth or death of the host plants. During the co-evolutionary arms race between viruses and plants, virus-derived small interfering RNAs challenge the plant's defense response and inhibit host immunity through the RNA silencing system. However, it is currently unknown if rice black-streaked dwarf virus can produce the same small interfering RNAs to mediate the RNA silencing in different infected species. In this study, four small RNA libraries and four degradome libraries were constructed by extracting total RNAs from the leaves of the maize (Zea mays) inbred line B73 and japonica rice (Oryza sativa) variety Nipponbare exposed to feeding by viruliferous and non-viruliferous small brown planthoppers. We analyzed the characteristics of small RNAs and explored virus-derived small interfering RNAs in small RNA libraries through high-throughput sequencing. On analyzing the characteristics of small RNA, we noted that the size distributions of small RNAs were mainly 24-nt (19.74%-62.00%), whereas those of virus-derived small interfering RNAs were mostly 21-nt (41.06%-41.87%) and 22-nt (39.72%-42.26%). The 5'-terminal nucleotides of virus-derived small interfering RNAs tended to be adenine or uracil. Exploring the distribution of virus-derived small interfering RNAs hot spots on the viral genome segments revealed that the frequency of hot spots in B73 was higher than those in Nipponbare. Meanwhile, hotspots in the S9 and S10 virus genome segments were distributed similarly in both hosts. In addition, the target genes of small RNA were explored by degradome sequencing. Analyses of the regulatory pathway of these target genes unveiled that viral infection affected the ribosome-related target genes in maize and target genes in metabolism and biosynthesis pathways in rice. Here, 562 and 703 virus-derived small interfering RNAs were separately obtained in maize and rice, and 73 virus-derived small interfering RNAs named as co-vsiRNAs were detected in both hosts. Stem-loop PCR and RT-qPCR confirmed that co-vsiRNA 3.1 and co-vsiRNA 3.5 derived from genome segment S3 simultaneously play a role in maize and rice and inhibited host gene expression. The study revealed that rice black-streaked dwarf virus can produce the same small interfering RNAs in different species and provides a new direction for developing the new antiviral strategies.

Parasitic success of the pathogenic plant Phelipanche ramosa (L.) Pomel. (Orobanchaceae) differs in some re‐infected versus naïve tomato cultivars

AbstractPlants are exposed to infection and predation by organisms from most kingdoms of life, including their own. Layers of molecular defence mechanisms have evolved to limit damage and disease from microbial and insect pathogens, and plants can also defend themselves against attack by members of their own kingdom. These so‐called parasitic plants attach to and take up nutrients from a host plant. It is not yet known whether parasites belonging to the plant kingdom can elicit a systemic defence response in their hosts, to which they have much more in common molecularly than viruses and fungi. To gain insight as to whether previous infection reduces the susceptibility of a host, we used two successive rounds of infection of the same host plants with the holoparasitic plant Phelipanche ramosa (‘broomrape,’ Orobanchaceae). We tested seven cultivars of tomato, and found that the ‘Moneymaker’ cultivar was re‐infested at a lower rate than its naïve counterpart and, if pre‐infested, supported fewer parasites than other cultivars. We collected tissue for RNA sequencing at the host–parasite interface of two cultivars, ‘Moneymaker’ and ‘Zuckertraube’, the latter of which showed no difference in susceptibility upon reinfection. These data revealed tomato cultivar‐specific transcriptional profiles in the parasite, including the upregulation of several peroxidase genes in parasites infecting ‘Moneymaker’, compared to ‘Zuckertraube’. Furthermore, we detected the upregulation of lignin biosynthesis genes in ‘Moneymaker’ tomato plants when they were pre‐infected with the holoparasitic plant. Together, our data suggest that some tomato cultivars may be naturally able to build up defences against parasitic plant infection. This could be relevant for agriculture, in that cuttings or other forms of vegetative propagation of pre‐infected tomato plants can prime crops to withstand field infestations more effectively.

AvrSr27 is a zinc-bound effector with a modular structure important for immune recognition.

Effector proteins are central to the success of plant pathogens, while immunity in host plants is driven by receptor-mediated recognition of these effectors. Understanding the molecular details of effector-receptor interactions is key for the engineering of novel immune receptors. Here, we experimentally determined the crystal structure of the Puccinia graminis f. sp. tritici (Pgt) effector AvrSr27, which was not accurately predicted using AlphaFold2. We characterised the role of the conserved cysteine residues in AvrSr27 using in vitro biochemical assays and examined Sr27-mediated recognition using transient expression in Nicotiana spp. and wheat protoplasts. The AvrSr27 structure contains a novel β-strand rich modular fold consisting of two structurally similar domains that bind to Zn2+ ions. The N-terminal domain of AvrSr27 is sufficient for interaction with Sr27 and triggering cell death. We identified two Pgt proteins structurally related to AvrSr27 but with low sequence identity that can also associate with Sr27, albeit more weakly. Though only the full-length proteins, trigger Sr27-dependent cell death in transient expression systems. Collectively, our findings have important implications for utilising protein prediction platforms for effector proteins, and those embarking on bespoke engineering of immunity receptors as solutions to plant disease.

A story of becoming a horticultural threat, cypress jewel beetle Lamprodila festiva (Coleoptera, Buprestidae): analytical approach of its European escalation based on bibliographical sources

The cypress jewel beetle, Lamprodila festiva, as one of the most destructive local invasive pests in Europe is currently an extreme threat to the coniferous Cupressaceae trees. The beetle spread at an unprecedented pace and intensity and poses a threat to many countries. Our study aimed to map the Palearctic distribution of L. festiva and measure the dispersal's pace and directions. Besides, one of our goals was visualising the adult’s seasonal activity and their host plant choice preference. A meta-analytical assessment was carried out to answer these questions based on the related bibliographical sources available in scientific databases. Our results confirmed that L. festiva has spread with extraordinary speed and success across the western Palaearctic areas, where the consequences of global warming have provided optimal conditions. The first population successful reproduction was started at five well-differentiated natural reserve areas across Europe in a latent manner. The flight season of L. festiva typically occurs from May to July, with the peaks varying depending on the area of distribution. Our studies have shown that L. festiva is a typical oligophagous pest, favouring certain species within its range of host plants. Thus, the genera Thuja, Platycladus and Juniperus species are most affected by its damage. Starting from its exceptional distribution characteristics, realising biological explanatory and applied protection research related to this species can become an urgent expectation in the future.

A Study of the Population Density of Aphids and Coccinella septempunctata on Different Wheat Cultivars

Background: Wheat is considered one of the primary and strategic grain crops in the world in terms of production and importance. The increment in both quantity and quality of wheat production renders it susceptible to various pests and diseases, including both insects and non-insect pests. The study aims to study the extent of infection of the IPA 99, IPA 22 and Abu Ghraib wheat varieties with aphids. Methods: A general survey of aphids on Abu Ghraib, IPA 99 and IPA 22 wheat varieties was carried out in the fields of the College of Agriculture/ University of Baghdad in Abu Ghraib during the growing season 2021-2022. Result: The results of the field survey indicated the presence of three species of aphids on the wheat crops belonging to the order Hemiptera and the family Aphididae: the wheat aphid [Schizaphis graminum (Rondani)], the oat aphid [Rhopalosiphum padi (L.)] and the corn aphid (Rhopalosiphum maidis). Wheat and oat aphids were the most commonly found on the crops. The presence of aphids on the plants was affected by the predominant environmental conditions like temperature, humidity, the chemical components of the host plants and the interactions between these factors. Additionally, we identified one type of predator belonging to the order of Coleoptera, the seven-spotted ladybug (Coccinella septempunctata), which was observed to be affected by the pest density. Aphids are a major pest of wheat in Iraq and they can cause significant losses of crops if their population is not controlled.

Rice Brown Planthopper, Nilaparvata lugens (Stål) Feeding Behaviour in Resistant NAGINA22 Rice Mutants

Background: Rice (Oryza sativa L.), is an important staple food and an excellent source of calories in India. Of the different insect pests attacking rice, brown planthopper, BPH, Nilaparvata lugens (Stål) is an important sucking pest causing upto 100% yield losses. Host plant resistance is the most important method in keeping BPH under control and understanding the underlying mechanisms of resistance is necessary to breed the resistant varieties with desirable characters. Methods: Selected EMS mutant lines of Nagina22 (N22) variety, which were previously mass screened under controlled greenhouse conditions were assessed for their antixenosis mechanism to brown planthopper feeding by measuring probing marks and honeydew excretion area by following standard procedures and statistical analysis was done by using Statistix 8.1 software. Result: Both the brown planthopper nymphs and adults probed more in the resistant mutants compared to the susceptible mutants whereas the BPH adults probed more times (24.4) compared to the nymphs (22.2). The recorded honeydew excretion area by the resistant mutants was lower than that of susceptible mutants. In general, the BPH adults fed more and excreted more honeydew (79.5 mm2) compared to the nymphs (59.0 mm2). The damage score has a negative correlation with the probing marks of adults (-0.207) and nymphs (-0.411); and a positive correlation with honeydew excretion of adults (0.547) and nymphs (0.200). In this study, the EMS N22 mutants resistant to BPH, with a greater number of probing marks and less honeydew excretion area can serve as best donors in the breeding programmes to develop brown planthopper resistant varieties.

Plant‐mediated facilitation to conspecifics and heterospecifics by two phloem‐feeding maize pests: The influence of insect identity and order of arrival

Abstract Herbivory by insects leads to changes in both primary and secondary plant metabolism, ultimately impacting subsequent interactions. Some phloem‐feeding insects have developed mechanisms to suppress herbivore‐induced plant defences and manipulate the quality of host phloem sap, thereby facilitating their establishment on the host plant. Based on evidence that the specialized phloem‐feeding insects, Dalbulus maidis and Rhopalosiphum maidis, can suppress herbivore‐induced defences in maize, we hypothesized that infestation by either of these pests in maize would facilitate the colonization and establishment of subsequent conspecific and heterospecific individuals. We conducted a series of behavioural assays with these insects in both laboratory and greenhouse settings. The corn leafhopper D. maidis preferred previously infested plants as hosts, but it did not discriminate between conspecific‐ or heterospecific‐infested plants for colonization. However, when selecting a host for oviposition, it preferred depositing eggs on conspecific‐infested plants, which were the hosts that the offspring performed better compared to both non‐infested and heterospecific‐infested plants. The corn aphid R. maidis also preferred previously infested plants over non‐infested plants as hosts. However, the aphid preferred heterospecific‐infested over conspecific‐infested plants, even though heterospecific‐infested plants were hosts of lower quality to aphids. Aphids performed better on conspecific‐infested plants, followed by heterospecific‐infested plants, when compared to non‐infested plants. Our results confirm that previous colonization by the specialized phloem‐feeding insects facilitates subsequent infestations by conspecifics and heterospecifics. However, the facilitation for heterospecifics was asymmetric, as colonization by D. maidis facilitated infestations by R. maidis more than the reverse sequence of infestation.

Tritrophic Interactions Mediated by Zoophytophagous Predator-Induced Host Plant Volatiles.

The zoophytophagous mirid predator Nesidiocoris tenuis and the ectoparasitoid Stenomesius japonicus are important biological control agents for several agricultural pests including the invasive leafminer, Phthorimaea absoluta, a destructive pest of Solanaceous crops especially tomato in sub-Saharan Africa. However, little is known about how feeding by N. tenuis can influence the tritrophic interactions in the tomato plant. Here, we tested the hypothesis that N. tenuis phytophagy would influence the tritrophic olfactory interactions between the host plant tomato and pest, predator, and parasitoid. In olfactometer assays, P. absoluta females and N. tenuis adults were both attracted to constitutive volatiles released by the tomato plant. Whereas females of P. absoluta avoided volatiles released by N. tenuis-infested plants, S. japonicus females and N. tenuis adults were attracted to the induced volatiles. In coupled gas chromatography-electroantennographic detection (GC-EAD) recordings of intact and N. tenuis-infested plant volatiles, antennae of P. absoluta and S. japonicus females both detected eight components, whereas N. tenuis adults detected seven components which were identified by GC-mass spectrometry (GC-MS) as terpenes and green leaf volatiles (GLVs). Dose-response olfactometer bioassays revealed that the responses of P. absoluta, N. tenuis, and S. japonicus varied with the composition and concentration of blends and individual compounds tested from N tenuis-induced volatiles. Females of P. absoluta showed no preference for an eight-component blend formulated from the individual repellents including hexanal, (Z)-3-hexenyl butanoate, and δ-elemene identified in the volatiles. On the other hand, S. japonicus females were attracted to an eight-component blend including the attractants (E)-2-hexenal, (Z)-3-hexenol, methyl salicylate, β-phellandrene, and (E)-caryophyllene. Likewise, N. tenuis adults were attracted to a seven-component blend including the attractants β-phellandrene, δ-elemene, and (E)-caryophyllene identified in the volatiles. Our findings suggest that there is potential for the use of terpenes and GLVs to manage the insects in the tritrophic interaction.

Host and Shelter Plants for the Beet Leafhopper which Vectors Curly Top Viruses and Phytoplasmas in Southern Idaho

Weeds and crop plants not only serve as reproductive hosts and transitory or shelter plants for the beet leafhopper (BLH; Circulifer tenellus) but also as sources of plant pathogens that can then be vectored by the BLH. Thus, the plants that the BLH are feeding on and infecting is of interest and may be changing over time. Therefore, BLH samples from a recent survey were investigated through DNA barcoding via the rbcL and matK chloroplast gene regions to determine what the BLHs had been feeding on prior to capture on yellow sticky cards in southern Idaho during 2020 and 2021. In June both years, the first generation of BLHs predominately fed on Pinus spp. (59 to 76% of samples) which were likely in mountainous areas and dispersed approximately 48 to 80 km to crop and sagebrush steppe locations. During July to September, the BLH predominantly fed on Salsola spp. (Russian thistle; 61 to 66% of samples) and Bassia scoparia (Kochia; 15% of samples). Both years the BLHs that fed on pine had the highest percentage (55 and 75%, respectively) of samples with beet curly top virus based on primers that can detect both the Worland and Colorado strains. Both years, BLH that had fed on Russian thistle and alfalfa had the highest percentage of samples with Spinach curly top Arizona virus. These data will be utilized in the development of future curly top management plans.

Identification and Characterization of Colletotrichum truncatum and C. destructivum Causing Stem Rot of White Clover in China.

White clover (Trifolium repens L.) is an excellent quality forage legume species with superior planting efficiency, which reduces the cost of artificial weeding and nitrogen fertilizer inputs, and has feeding and economic value. However, from June to September 2022, severe stem rot affected the yield and quality of white clover crops in Harbin, Heilongjiang Province, China. The aim of this study was to identify the causative agents of the disease. Overall, Colletotrichum truncatum (6 isolates) and C. destructivum (10 isolates) were obtained from rotten white clover stems and identified based on morpho-molecular characteristics and phylogenetic analyses. Pathogenicity tests of the isolates revealed that C. destructivum had a higher pathogenicity to white clover than C. truncatum. In addition, all isolates were highly pathogenic to broad bean, fodder soybean, soybean, pak choi, and chickpea, were pathogenic to mint, and did not infect corn, wheat, or cilantro. C. destructivum and C. truncatum isolates were very sensitive to tebuconazole and pyraclostrobin, with EC50 values of 0.54 to 0.70 μg/ml and 0.42 to 0.62 μg/ml, respectively, efficacies ranging between 93.2 to 94.9% and 90.2 to 95.2% at 600 μg/ml and 450 μg/ml, respectively, and EC90 values of 1.88 to 13.36 μg/ml and 1.32 to 23.39 μg/ml, respectively. Therefore, intercropping of host and nonhost plants and chemicals can be considered to control stem rot in white clover. These results provide a basis for controlling C. destructivum and C. truncatum in white clover in China.

Preliminary Assessment of Alfalfa Crop Trap Strategy in Regulating Natural Predators for Aphis gossypii Glover Control

Aphis gossypii Glover is an important pest in cotton plantations. Medicago sativa L. (alfalfa) is a host plant for the aphid Aphis craccivora Koch and may prove to be an important reservoir of natural enemies to combat this pest. The objective of this study was to analyze the impact of different mowing frequencies of alfalfa traps on A. gossypii and their natural enemies, using both ground survey data and UAV remote sensing data. The alfalfa was mowed twice to facilitate the transfer of this primary natural enemy to the cotton fields. Ground surveys were carried out every five days to gather data, while temporal niche and niche overlap methods were used for further analysis. Findings collected over a period ranging from day 31 to day 91 indicated that compared to their counterparts with no alfalfa traps, the cotton fields containing these pest control measures demonstrated a reduction in the A. gossypii population of approximately 16%. A survey conducted 5 days after mowing the alfalfa on days 61 and 71 found that the cotton fields with alfalfa traps experienced a 24.14% and 26.09% reduction in A. gossypii numbers. In contrast, the cotton fields without alfalfa traps experienced a 76.92% and 55.08% increase in cotton aphid numbers during the same period. It is noteworthy that the cotton fields with alfalfa traps showed a delayed onset of cotton aphid damage of approximately 5 days compared to the fields without alfalfa traps. This discovery has significant implications for understanding the ecological control mechanism of A. gossypii within alfalfa traps. Planting alfalfa traps around fields in Xinjiang could be promoted as a method to prevent and control aphid damage.

Dynamics of Melanaphis sorghi1 and Its Natural Enemies in Johnsongrass and Grain Sorghum with Variable Levels of Host Plant Resistance

Dynamics of Melanaphis sorghi1 and Its Natural Enemies in Johnsongrass and Grain Sorghum with Variable Levels of Host Plant Resistance

Cultivars and Production Environments Shape Shoot Endophyte Profiles of Boxwood with Different Blight Resistance

Phyllosphere colonizers, including bacteria and fungi, are critical for plant growth and health. Yet, how they are affected simultaneously by host plant cultivar, local environment and agricultural practices was not well understood. We used boxwood, an iconic landscape plant and a major evergreen shrub crop in the U.S. nursery industry, as a model plant, and sequenced 16S rRNA and ITS amplicons to examine the assemblages of endophytic bacteria and fungi in the shoots of four cultivars representing three levels of boxwood blight resistance under two distinct climates and production systems in Oregon and Virginia. Cultivar and local environment were the two main drivers shaping the composition and structure of the boxwood endophytic microbial community, particularly the fungal community. Three bacterial and seven fungal genera were consistently identified with high prevalence and abundance as the core taxa from four cultivars and two locations across three sampling times. The microbial composition varied among the levels of boxwood blight resistance and taxa specific to the tolerant cultivar were fewer compared to the susceptible one. Identification of these microbial indicators, along with the core taxa, is foundational for developing a microbiome-based plant breeding program and a systems approach to improve boxwood health and production under a changing climate.

Shedding light on bacteria–host interactions with the aid of TnSeq approaches

ABSTRACT Bacteria are highly adaptable and grow in diverse niches, where they often interact with eukaryotic organisms. These interactions with different hosts span the entire spectrum from symbiosis to pathogenicity and thus determine the lifestyle of the bacterium. Knowledge of the genetic determinants involved in animal and plant host colonization by pathogenic and mutualistic bacteria is not only crucial to discover new drug targets for disease management but also for developing novel biostimulant strategies. In the last decades, significant progress in genome-wide high-throughput technologies such as transposon insertion sequencing has led to the identification of pathways that enable efficient host colonization. However, the extent to which similar genes play a role in this process in different bacteria is yet unclear. This review highlights the commonalities and specificities of bacterial determinants important for bacteria–host interaction.

Ectomycorrhizal fungi alter soil food webs and the functional potential of bacterial communities.

Most of Earth's trees rely on critical soil nutrients that ectomycorrhizal fungi (EcMF) liberate and provide, and all of Earth's land plants associate with bacteria that help them survive in nature. Yet, our understanding of how the presence of EcMF modifies soil bacterial communities, soil food webs, and root chemistry requires direct experimental evidence to comprehend the effects that EcMF may generate in the belowground plant microbiome. To this end, we grew Pinus muricata plants in soils that were either inoculated with EcMF and native forest bacterial communities or only native bacterial communities. We then profiled the soil bacterial communities, applied metabolomics and lipidomics, and linked omics data sets to understand how the presence of EcMF modifies belowground biogeochemistry, bacterial community structure, and their functional potential. We found that the presence of EcMF (i) enriches soil bacteria linked to enhanced plant growth in nature, (ii) alters the quantity and composition of lipid and non-lipid soil metabolites, and (iii) modifies plant root chemistry toward pathogen suppression, enzymatic conservation, and reactive oxygen species scavenging. Using this multi-omic approach, we therefore show that this widespread fungal symbiosis may be a common factor for structuring soil food webs.IMPORTANCEUnderstanding how soil microbes interact with one another and their host plant will help us combat the negative effects that climate change has on terrestrial ecosystems. Unfortunately, we lack a clear understanding of how the presence of ectomycorrhizal fungi (EcMF)-one of the most dominant soil microbial groups on Earth-shapes belowground organic resources and the composition of bacterial communities. To address this knowledge gap, we profiled lipid and non-lipid metabolites in soils and plant roots, characterized soil bacterial communities, and compared soils amended either with or without EcMF. Our results show that the presence of EcMF changes soil organic resource availability, impacts the proliferation of different bacterial communities (in terms of both type and potential function), and primes plant root chemistry for pathogen suppression and energy conservation. Our findings therefore provide much-needed insight into how two of the most dominant soil microbial groups interact with one another and with their host plant.

New records of Pestalotioid species associated with leaf spot disease on Camellia sinensis from northern Thailand

Camellia sinensis (L.) Kuntze var. assamica (Miang tea) is widely distributed in northern Thailand due to its traditional and industrial attributes, including black tea and Miang production. In this study, two Pestalotioid taxa associated with C. sinensis leaf spots were collected in Mae Taeng district, Chiang Mai Province, Thailand. Species delineation was based on the evidence from morphological and multi-locus phylogenies using ITS, tub2 and tef1-α. Neopestalotiopsis saprophytica is herein reported as a new record on Camellia sinensis, while Pseudopestalotiopsis chinensis is recorded as a new geographical record from Thailand. The findings of this research have the potential to offer fresh insights into the two previously documented species within the existing fungal community associated with C. sinensis in Thailand. This, in turn, could enhance our comprehension of their interactions with the host plant in the times ahead.

The Impact of Aboveground Epichloë Endophytic Fungi on the Rhizosphere Microbial Functions of the Host Melica transsilvanica

In nature, the symbiotic relationship between plants and microorganisms is crucial for ecosystem balance and plant growth. This study investigates the impact of Epichloë endophytic fungi, which are exclusively present aboveground, on the rhizosphere microbial functions of the host Melica transsilvanica. Using metagenomic methods, we analyzed the differences in microbial functional groups and functional genes in the rhizosphere soil between symbiotic (EI) and non-symbiotic (EF) plants. The results reveal that the presence of Epichloë altered the community structure of carbon and nitrogen cycling-related microbial populations in the host’s rhizosphere, significantly increasing the abundance of the genes (porA, porG, IDH1) involved in the rTCA cycle of the carbon fixation pathway, as well as the abundance of nxrAB genes related to nitrification in the nitrogen-cycling pathway. Furthermore, the presence of Epichloë reduces the enrichment of virulence factors in the host rhizosphere microbiome, while significantly increasing the accumulation of resistance genes against heavy metals such as Zn, Sb, and Pb. This study provides new insights into the interactions among endophytic fungi, host plants, and rhizosphere microorganisms, and offers potential applications for utilizing endophytic fungi resources to improve plant growth and soil health.